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OCEAN-COLOUR BIBLIOGRAPHY

This bibliography is updated periodically with new references submitted by readers. Another very useful ocean colour bibliography is NASA's searchable Ocean Color Publications Database

If you would like your peer-reviewed publications included in this bibliography, please send the information to the IOCCG Project Scientist, Dr. Venetia Stuart, by emailing vstuart{at}ioccg.org. Please include the full reference in the email using the following format:

Lastname, Initials., Lastname, Initials., etc. (date). Title of publication, Journal Abbreviation, page numbers. [URL] (if available).
Please do NOT send the PDF file itself as an attachment. Note that only peer-reviewed articles will be accepted.

Recent references (2013 - 2014) are also available on a separate page

Bibliography

[A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z]
Aarup, T., 2002. Transparency of the North Sea and Baltic Sea - a Secchi depth data mining study. Oceanologia, 44: 323-337.

Aarup, T., Groom, S. and Holligan, P.M. (1989). CZCS imagery of the North Sea. Remote Sensing of Atmosphere and Oceans. Adv. Space Res., 9: 443-451.

Aarup, T., Groom, S. and Holligan, P.M. (1990). The processing and interpretation of North Sea CZCS imagery. Neth. J. Sea Res., 25: 3-9.

Aarup, T., Holt, N., and Højerslev, N.K. (1996). Optical measurements in the North Sea - Baltic Sea transition zone. II. Water mass classification along the Jutland west coast from salinity and spectral irradiance measurements. Cont. Shelf Res., 16: 1343-1353.

Aarup, T., Holt, N., and Højerslev, N.K. (1996). Optical measurements in the North Sea - Baltic Sea transition zone. III. Statistical analysis of bio-optical data from the Eastern North Sea, the Skagerrak and the Kattegat. Cont. Shelf Res., 16: 1355-1377.

Aas, E., and Berge, G. (1976). Irradiance observations in the Norwegian and Barents Seas. Rep. Dept. Geophys., Univ. Oslo, 23, 42 pp.

Aas, E., (1980). Relations between total quanta, blue irradiance and Secchi disk observations. In: Studies in Physical Oceanography. Papers dedicated to professor Nils G. Jerlov in commemoration of his seventieth birthday. Rep. Dept. Phys. Oceanogr., Univ. Copenhagen, 42,:11-27.

Aas, E. (1984). The wavelength selectivity of light scattering in the Barents Sea. Rep. Dept. Geophys., Univ. Oslo, 54, 20 pp.

Aas, E. (1987). Two-stream irradiance model for deep waters. Appl. Opt., 26: 2095- 2101.

Aas, E. (1994). Estimates of contributions to the satellite radiance above the Oslofjord. Rep. Dept. Geophys., Univ. Oslo, 91, 27 pp.

Aas, E. (2010). Estimates of radiance reflected towards the zenith at the surface of the sea. Ocean Sci., 6: 861-867. open access: http://www.ocean-sci.net/6/861/2010/os-6-861-2010.pdf

Aas, E. and Høkedal, J. (1996). Penetration of ultraviolet B, blue and quanta irradiance into Svalbard waters. Polar Res., 15: 127-138.

Aas, E. and Høkedal, J. (1999). Reflection of spectral sky irradiance on the surface of the sea and related properties. Remote Sens. Environ., 70: 181-190.

Aas, E., Høkedal, J., H¿øerslev, N. K., Sandvik, R., and Sakshaug, E. (2002). Spectral properties and UV-attenuation in Arctic marine waters. In: Hessen, D. O. (ed.), UV Radiation and Arctic Ecosystems. Springer-Verlag, Heidelberg, 23-56.

Aas, E., Høkedal, J., and Sørensen, K. (2005). Spectral backscattering coefficient in coastal waters. Int. J. Remote Sens., 26 (2), 331-343.

Aas, E., Høkedal, J. and Højerslev, N. K. (2009). Conversion of sub-surface reflectances to above-surface MERIS reflectance. Int. J. Remote Sens., 30, 5767-5791.

Aas, E., Højerslev, N. K. and Lundgren, B. (1997). Spectral irradiance, radiance and polarization data from the Nordic Cruise in the Mediterranean Sea during June-July 1971. Rep. Dept. Geophys., Univ. Oslo, 102, 97 pp.

Aas, E., and Sørensen, K. (1995). Field observations of the relation between satellite and sea radiances in coastal waters. Appl. Opt., 34, 5422-32.

Aas, E., and Højerslev, N.K. (2001). Attenuation of ultraviolet irradiance in North European coastal waters, Oceanologia, 43(2): 139-168.

Abbott, M.R. and Chelton, D.B. (1991). Advances in passive remote sensing of the ocean. Rev. Geophys. Suppl., 571-589.

Abbott, M.R. and Zion, P.M. (1985). Satellite observations of phytoplankton variability during an upwelling event. Cont. Shelf Res., 4: 661-680.

Abbott, M.R., Brink, K.H., Booth, C.R., Blasco, D., Swenson, M.S., Davis, C.O. and Codispoti, L.A. (1995). Scales of variability of bio-optical properties as observed from near-surface drifters. J. Geophys. Res., 100: 13,345-13,367.

Acker, J.G. and Leptoukh G. (2007). Online analysis enhances use of NASA Earth science data. Eos, Trans. AGU, 88(2): 14 and 17.

Acker, J., Leptoukh, G., Shen, S., Zhu, T., and Kempler, S. (2007). Remotely-sensed chlorophyll a observations of the northern Red Sea indicate seasonal variability and influence of coastal reefs. Journal of Marine Systems, [Published Online, March 12, 2007]. doi:10.1016/j.jmarsys.2005.12.006 [NASA Earth Observatory Article]

Acker, J.G., Brown, C.W., Hine, A.C. Armstrong, E. and Kuring, N. (2002). Satellite remote sensing observations and aerial photography of storm-induced neritic carbonate transport from shallow carbonate banks. Int. J. Rem. Sens., 23(14): 2853-2868.

Acker,J., Shen, S., Leptoukh, G., Serafino, G., Feldman, G. and McClain, C. (2002). SeaWiFS ocean color data archive and distribution system: assessment of system performance. IEEE Trans. Geosci. and Rem. Sens., 40: 90-103.

Adam, M. Shiham and Anderson, R. Charles and Goes, Joaquim I (2011). From Monsoons to Mantas: Seasonal Distribution of Manta alfredi in the Maldives. Fisheries Oceanography 20: (2) 104-113 [Full article]

Adams, C.N., Plass, G.N. and Kattawar, G.W. (1974). The influence of ozone and aerosols on the brightness and color of the twilight sky. J. Atmos. Sci., 31: 1662-1674.

Aguirre-Gomez, R., (2000). Detection of total suspended sediments in the North Sea using AVHRR and ship data. Int. J. Rem. Sens., 21(8): 1583-1596.

Aguirre-Gomez, R., Boxall S.R., Weeks A.R. (2001). Detecting photosynthetic algal pigments in natural populations using a high-spectral-resolution spectroradiometer. Int. J. Rem. Sens., 22(15): 2867-2884.

Aguirre-Gomez, R., Weeks A.R., Boxall S.R., (2001). The identification of phytoplankton pigments from absorption spectra. Int. J. Rem. Sens., 22: 315-338.

Ahlnüs, K. and Royer, T.C. (1989). Application of satellite visible band data to high latitude oceans. Rem. Sens. Environ., 28: 85-93.

Ahmad, Z., Franz, B.A., McClain,C.R., Kwiatkowska, E.J., Werdell, J., . Shettle E.P., and Holben, B.N. (2010). New aerosol models for the retrieval of aerosol optical thickness and normalized water-leaving radiances from the SeaWiFS and MODIS sensors over coastal regions and open oceans. Applied Optics, 49:(29) 5545-5560 [Abstracte]

Ahmed, S., Gilerson, A. Gill, A., Gross, B.M., Moshary, F. and Zhou, J.(2004). Separation of fluorescence and elastic scattering from algae in seawater using polarization discrimination, Optics Communications, 235/1-3: 23-30.

Ahn, Y.H., Bricaud, A. and Morel, A. (1992). Light backscattering efficiency and related properties of some phytoplankters. Deep-Sea Res., 39: 1835-1855.

Ahn, Y.H. and Shanmugam, P. (2006). Detecting the red tide algal blooms from satellite ocean color observations in optically-complex Northeast-Asia Coastal waters. Remote Sensing of Environment, 103: 419-437.

Ahn, Y.H. and Shanmugam, P. (2007). Derivation and analysis of the fluorescence algorithms to estimate chlorophyll a concentrations in ocean waters. Journal of Optics A: Pure and Applied Optics. 9: 352-362

Aiken, J., and Bale, A.J. (2000). An introduction to the Atlantic Meridional Transect (AMT) Programme. Prog. in Oceanog., 45(3-4): 251-256.

Aiken, J., Fishwick, J., Moore, G., and Pemberton, K. (2004). The annual cycle of phytoplankton photosynthetic quantum efficiency, pigment composition and optical properties in the western English Channel. J. mar. biol. Ass. U.K. 84: 301-313.

Aiken, J., Moore, G.F. and Holligan, P.M. (1992). Remote sensing of oceanic biology in relation to global climate change. J. Phycol., 28: 579-590.

Aiken, J., Rees, N., Hooker, S., Holligan, P., Bale, A., Robins, D., Moore, G., Harris, R. and Pilgrim, D. (2000). The Atlantic Meridional Transect: overview and synthesis of data. Prog. in Oceanog., 45(3-4): 257-312.

Aiken, J., J. R. Fishwick, S. Lavender, R. Barlow, G. F. Moore, H. Sessions, S. Bernard, J. Ras, and N. J. Hardman-Mountford (2006). Validation of MERIS reflectance and chlorophyll during the BENCAL cruise October, 2002: preliminary validation of new demonstration products for phytoplankton functional types and photosynthetic parameters. Int. J. Remote Sens., 27: DOI 10.1080/01431160600821036

Aiken, J. Hardman-Mountford, N.J., Barlow, R., Fishwick, J., Hirata, T. and Smyth, T. (2008). Functional links between bioenergetics and bio-optical traits of phytoplankton taxonomic groups: an overarching hypothesis with applications for ocean colour remote sensing. J. Plank. Res. 30(2):165-181.

Allali, K., Bricaud, A., and Claustre, H. (1997). Spatial variations in the chlorophyll-specific absorption coefficients of phytoplankton and photosynthetically active pigments in the Equatorial Pacific. J. Geophys. Res., 102(C6): 12413-12423.

Allali, K., Bricaud, A., Babin, M., Morel, A. and Chang, P. (1995). A new method for measuring spectral absorption coefficients of marine particles. Limnol. Oceanogr., 40(8): 1526-1532.

Alvain S., Le Quéré C, Bopp L., Racault M-F., Beaugrand G., Dessailly D. and Buitenhuis. E.T. (2013). Rapid climatic driven shifts of diatoms at high latitudes. Remote Sensing of Environment, 132: 195–201. [PDF File ]

Alvain, S., Loisel, H. and Dessailly, D. (2012). Theoretical analysis of ocean color radiances anomalies and implications for phytoplankton groups detection in case 1 waters. Optics Express 20(2): 1070-1083 [PDF File ]

Alvain, S., C. Moulin, Y. Dandonneau, and F. M. Bréon (2005). Remote sensing of phytoplankton groups in case 1 waters from global SeaWiFS imagery. Deep Sea Res. I, 52, 1989-2004.

Alvain, S., C. Moulin, Y. Dandonneau, H. Loisel, and F. M. Bréon (2006). A species-dependent bio-optical model of case I waters for global ocean color processing. Deep Sea Res. I, In press.

Alvain, S. Moulin, C., Dandonneau H., Bopp, L. and Loisel, H. (2006) Global monitoring of dominant phytoplankton groups in surface waters using SEAWIFS imagery. Geophysical Research Abstracts, Vol. 8, 05806, 2006. SRef-ID: 1607-7962/gra/EGU06-A-05806

Alvain S., C. Moulin, Y. Dandonneau, and H. Loisel (2008). Seasonnal distribution and succession of dominant phytoplankton groups in the global ocean : a satellite view. Global Biogeochemical Cycles 22 GB3001, doi:10.1029/2007GB003154.

Amin, R. Zhou, J. Gilerson, A. Gross, B. Moshary, F. and Ahmed, S. (2009). Novel optical techniques for detecting and classifying toxic dinoflagellate Karenia brevis blooms using satellite imagery. Optics Express 17: 9126 - 9144.

Ammenberg, P., Flink, P., Lindell, T., Pierson, T., and Strombeck, N. (2002). Bio-optical modelling combined with remote sensing to assess water quality. Int. J. Rem. Sens., 23(8): 1621-1638.

Amos, C.L. and Topliss, B.J. (1985). Discrimination of suspended particulate matter in the Bay of Fundy using the nimbus 7 coastal zone color scanner. Can. J. Rem. Sens., 11: 85-92.

Anderson,W. Gnanadesikan, A. and Wittenberg A. (2009). Regional impacts of ocean color on tropical Pacific variability. Ocean Sci. Discuss., 6: 243-275

Anderson, C.A., D.A. Siegel, M.A. Brzezinski, N. Guillocheau, (2008). Controls on Temporal Patterns in Phytoplankton Community Structure in the Santa Barbara Channel, California. Journal of Geophysical Research, Oceans, 113, C04038, doi:10.1029/2007JC004321 [PDF]

Anderson, CR, Kudela, RM, Benitez-Nelson, C, Sekula-Wood, E., Burrell, CT, Chao,Y, Langlois, G, Goodman, J, and Siegel, DA (2011). Detecting toxic diatom blooms from ocean color and a regional ocean model. Geophys. Res. Lett. 38: L04603, doi:10.1029/2010GL045858, 2011

André, J.-M. (1992). Ocean color remote-sensing and the subsurface vertical structure of phytoplankton pigments. Deep-Sea Res. I., 39: 763-779.

André, J.-M., and Morel, A. (1989). Simulated effects of barometric pressure and ozone content upon the estimate of marine phytoplankton from space. J. Geophys. Res., 94: 1029-1037.

André, J.-M., and Morel, A. (1991). Atmospheric corrections and interpretation of marine radiances in CZCS imagery, revisited. Oceanol. Acta., 14: 3-22.

Anstee, J., Dekker, A., Byrne, G., Daniel, P., Held, A., and Miller, J. (2000). Use of hyperspectral imaging for benthic species mapping in South Australian coastal waters. 10th Australasian Remote Sensing and Photogrammetry Conference, 1051-1061.

Antoine, D., André, J-M. and Morel, A. (1996a). Oceanic primary production 2. Estimation at global scale from satellite (coastal zone color scanner) chlorophyll. Global Biogeochem. Cycles, 10: 57-69.

Antoine, D., Babin, M., Berthon, J-F., Bricaud, A., Gentili, B., Loisel, H., Maritorena, S. and Stramski , D. (2014). Shedding Light on the Sea: André Morel’s Legacy to Optical Oceanography. Annu. Rev. Marine. Sci. 6: 1-21. [Full article]

Antoine, D., F. d'Ortenzio, S. B. Hooker, G Bécu, B. Gentili, D. Tailliez, and A. J. Scott (2008). Assessment of uncertainty in the ocean reflectance determined by three satellite ocean color sensors (MERIS, SeaWiFS and MODIS-A) at an offshore site in the Mediterranean Sea (BOUSSOLE project), Journal of Geophysical Research, 113, C07013, doi:10.1029/2007JC004472. [PDF File]

Antoine, D., P. Guevel, J.-F. Desté, G. Bécu, F. Louis, A.J. Scott and P. Bardey, (2008). The «BOUSSOLE» buoy A new transparent-to-swell taut mooring dedicated to marine optics: design, tests and performance at sea, Journal of Atmospheric and Oceanic Technology, 25, 968-989.

Antoine D. and Morel A. (1995a). Modelling the seasonal course of the upper ocean pCO2: 1 : Development of a one-dimensional model. Tellus, 47B: 103-121.

Antoine D. and Morel A. (1995b). Modelling the seasonal course of the upper ocean pCO2: 2 : Validation of the model and sensitivity studies. Tellus, 47(B): 122-144.

Antoine, D. and Morel, A. (1996). Oceanic primary production 1. Adaptation of a spectral light-photosynthesis model in view of application to satellite chlorophyll observations. Global Biogeochem. Cycles, 10: 43-55.

Antoine, D. and Morel, A. 1998. Relative importance of multiple scattering by air molecules and aerosols in forming the atmospheric path radiance in the visible and near infrared parts of the spectrum. Appl. Optics, 37(12): 2245-2259.

Antoine D. and Morel A. (1999). A multiple scattering algorithm for atmospheric correction of remotely-sensed ocean colour (MERIS instrument): principle and implementation for atmospheres carrying various aerosols including absorbing ones. Int. J. Rem. Sens., 20(9): 1875-1916.

Antoine, D., Morel, A. and André, J.-M. (1996b). Algal pigment distribution and primary production in the eastern Mediterranean as derived from coastal zone color scanner observations. J. Geophys. Res., 100: 16,193-16,209.

Antoine, D., Morel, A., Gentili, B., Gordon, H.R., and Barzon, V.F., Evans, R.H., Brown, J.W., Walsh, S., Baringer, W., and Li, A. (2003). In Search of Long-term Trends in Ocean Color. EOS, 84(32): 301,308-309. [PDF file]

Antoine D., Morel, A., Gordon, H.R., Banzon, V.F. and R.H. Evans (2005). Bridging ocean color observations of the 1980's and 2000's in search of long-term trends. Journal of Geophysical Research, 110: C06009, doi:10.1029/2004JC002620.

Antoine D. and D. Nobileau (2006). Recent increase of the dust load over the Mediterranean Sea, as revealed from 6 years of ocean color satellite (SeaWiFS) observations. Journal of Geophysical Research, Atmosphere 111: D12214, doi:10.1029/2005JD006795.

Antoine D, D.A. Siegel, T Kostadinov, S. Maritorena, N.B. Nelson, B. Gentili, V. Vellucci and N. Guillocheau (2011), Variability in optical particle backscattering in three contrasting bio-optical oceanic regimes, Limnology and Oceanography, 56(3), 2011, 955–973.

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Arrigo, K.R., Robinson, D.H. and Sullivan, C.W. (1993). A high resolution study of the platelet ice ecosystem in McMurdo Sound, Antarctica: photosynthetic and bio-optical characteristics of a dense microalgal bloom. Mar. Ecol. Prog. Ser., 98: 173-185.

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Arrigo, K.R. and van Dijken, G.L. (2004). Annual changes in sea-ice, chlorophyll a, and primary production in the Ross Sea, Antarctica. Deep Sea Research. II. Topical Studies in Oceanography.51: 117-138.

Arrigo, K.R., Worthen, D.L., Robinson, D.H. (2003). A coupled ocean-ecosystem model of the Ross Sea: 2. Iron regulation of phytoplankton taxonomic variability and primary production. J. Geophys. Res., 108(C7): 3231 10.1029/2001JC000856, 16 July 2003[HTML].

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Astoreca R, Rousseau V, Ruddick K, Knechciak C, Van Mol B, Parent J-Y and Lancelot, C. (2009). Development and application of an algorithm for detecting Phaeocystis globosa blooms in the Case 2 Southern North Sea waters. Journal of Plankton Research 31(3): 287-300. [PDF File]

Astoreca R, V Rousseau and C Lancelot. 2009. Coloured dissolved organic matter (CDOM) in Southern North Sea waters: Optical characterization and possible origin. Estuarine, Coastal and Shelf Science, 85:633-640. [PDF File]

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Aurin, D. A., H. M. Dierssen, M. S. Twardowski and C. S. Roesler (2010). Optical complexity in Long Island Sound and implications for coastal ocean color remote sensing. J. Geophys. Res., 111: (C07011) [Abstract]

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